PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2517_p6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 251aa    MW: 28694.7 Da    PI: 9.0122
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2517_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.94.8e-1572123154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ +hn++Er RR++iNs f+ Lr++lP  +     kKls   ++ + v+YI +L
  RrC2517_p6  72 KKLNHNANERHRRKKINSLFSSLRSCLPDsD---ELKKLSIPKTVSRSVQYITEL 123
                 6789*************************66...9999**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.25371123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.41E-1272127No hitNo description
PfamPF000102.4E-1272123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1372137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-1572141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1077129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MHALRHTFPP NFGLESTGEY ESYNIVRDNH NNGTFLDFPV PNMYGVVHHQ TSLVDSVSSE  60
GNGIGNNSVV IKKLNHNANE RHRRKKINSL FSSLRSCLPD SDELKKLSIP KTVSRSVQYI  120
TELKEQVNKL IQKKEDILVR LSCQKERYVK AQPKVITSYV STVFASKLRD NEVMVQISSS  180
KIHKFSIYNV LSGLDEDGFV ILDVSSLSSR GEQLFYTLHL QVDKIDNYKL ICEELSLRIL  240
YLYEKCGYSS K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013601684.11e-158PREDICTED: transcription factor ORG2-like
SwissprotQ9M1K11e-114ORG2_ARATH; Transcription factor ORG2
TrEMBLA0A0D3DTT21e-158A0A0D3DTT2_BRAOL; Uncharacterized protein
STRINGBra041013.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-115bHLH family protein